Getting Started¶

Installation¶

cd 00panel
uv venv .venv && uv pip install -e ".[dev]"

First run — interactive TUI¶

uv run 00panel

This launches the arrow-key menu:

  Panel Design Workflow

  ▸ Demo by disease         Pick a disease → get a scored panel in seconds
    Score proteins          Multi-criteria demand + feasibility scoring
    Propose panel           Optimized panel selection with constraints
    ...

Select Demo by disease → pick a category → get a scored panel.

First run — CLI¶

# Score a few proteins
panel score TNF IL6 GDF15 CXCL10 VEGFA

# Run a full disease demo
panel demo inflammation --size 5

# See all commands
panel --help

Dependencies¶

Python ≥3.11
Network access (hits NIH, OpenAlex, ClinicalTrials.gov, EBI GWAS APIs)
bioingest data directory (for competitor menus, pathway data, protein mapping)

Environment variables¶

Variable	Default	Description
`PANEL_GRAPHRAG_API_URL`	`http://localhost:8000`	GraphRAG API endpoint
`PANEL_DATA_DIR`	`data`	Cache directory
`PANEL_OPENALEX_EMAIL`	(empty)	Email for OpenAlex polite pool